RNA Structure Determination [E-Book] : Methods and Protocols / edited by Douglas H. Turner, David H. Mathews.
Mathews, David H., (editor)
Turner, Douglas H., (editor)
New York, NY : Humana Press, 2016
XV, 283 p. 81 illus., 66 illus. in color. online resource.
Methods in molecular biology ; 1490
Full Text
Table of Contents:
  • Crumple: An Efficient Tool to Explore thoroughly the RNA Folding Landscape
  • Secondary Structure Prediction of Single Sequences using RNAstructure
  • Prediction of Secondary Structures Conserved in Multiple RNA Sequences
  • Predicting RNA-RNA Interactions Using RNAstructure
  • A Method to Predict the Structure and Stability of RNA/RNA Complexes
  • STarMir Tools for Prediction of microRNA Binding Sites
  • Traditional Chemical Mapping of RNA Structure in vitro and in vivo
  • High-throughput Nuclease Probing of RNA Structures using FragSeq
  • Mapping RNA Structure in vitro with SHAPE Chemistry and Next Generation Sequencing (SHAPE-Seq)
  • Experiment-assisted Secondary Structure Prediction with RNAstructure
  • RNA Secondary Structure Determination by NMR
  • Modeling Small Non-canonical RNA Motifs with the Rosetta FARFAR Server
  • Automated RNA 3D Structure Prediction with RNAComposer
  • RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS
  • Exploring Alternative RNA Structure Sets using MC-FLashfold and db2cm
  • NMR Methods for Characterization of RNA Secondary Structure
  • The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme and Riboswitch Crystal Structures. .