Protein Bioinformatics [E-Book] : From Protein Modifications and Networks to Proteomics / edited by Cathy H. Wu, Cecilia N. Arighi, Karen E. Ross.
Arighi, Cecilia N., (editor)
Ross, Karen E., (editor) / Wu, Cathy H., (editor)
New York, NY : Humana Press, 2017
XIV, 472 p. 130 illus., 127 illus. in color. online resource.
Methods in molecular biology ; 1558
Full Text
Table of Contents:
  • Protein Bioinformatics Databases and Resources
  • UniProt Protein Knowledgebase
  • Tutorial on Protein Ontology Resources
  • CATH-Gene3D: Generation of the Resource and its Use in Obtaining Structural and Functional Annotations for Protein Sequences
  • Structure-Based Virtual Screening
  • Bioinformatics Analysis of Protein Phosphorylation in Plant Systems Biology Using P3DB
  • Navigating the Glycome Space and Connecting the Glycoproteome
  • Impact of Nonsynonymous Single-Nucleotide Variations on Post-Translational Modification Sites in Human Proteins
  • Analysis of Cysteine Redox Post-Translational Modifications in Cell Biology and Drug Pharmacology
  • Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature
  • Functional Interaction Network Construction and Analysis for Disease Discovery
  • Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information
  • NDEx: A Community Resource for Sharing and Publishing of Biological Networks
  • Bioinformatics Analysis of Functional Associations of PTMs
  • Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes
  • iPTMnet: Integrative Bioinformatics for Studying PTM Networks
  • Protein Identification from Tandem Mass Spectra by Database Searching
  • Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite
  • Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry Proteomic Data: Data to Knowledge Pipelines
  • Annotation of Alternatively Spliced Proteins and Transcripts with Protein-Folding Algorithms and Isoform-Level Functional Networks
  • Computational and Statistical Methods for High-Throughput Mass Spectrometry Based PTMs Analysis
  • Cross-Species PTM Mapping from Phosphoproteomic Data. .