Modeling Peptide-Protein Interactions [E-Book] : Methods and Protocols / edited by Ora Schueler-Furman, Nir London.
London, Nir, (editor)
Schueler-Furman, Ora, (editor)
New York, NY : Humana Press, 2017
XI, 311 p. 87 illus., 68 illus. in color. online resource.
Methods in molecular biology ; 1561
Full Text
Table of Contents:
  • The Usage of ACCLUSTER for Peptide Binding Site Prediction
  • Detection of Peptide-Binding Sites on Protein Surfaces using the Peptimap Server
  • Peptide Sub-Optimal Conformation Sampling for the Prediction of Protein-Peptide Interactions
  • Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock
  • Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Protein-Peptide Interactions
  • Highly Flexible Protein-Peptide Docking Using CABS-Dock
  • AnchorDock for Blind Flexible Docking of Peptides to Proteins
  • Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK
  • Modeling Peptide-Protein Structure and Binding Using Monte Carlo Sampling Approaches: Rosetta FlexPepDock & FlexPepBind
  • Flexible Backbone Methods for Predicting and Designing Peptide Specificity
  • SImplifying the Design of Protein-Peptide Interaction Specificity with Sequence-Based Representations of Atomistic Models
  • Binding Specificity Profiles from Computational Peptide Screening
  • Enriching Peptide Libraries for Binding Affinity and Specificity through Computationally Directed Library Design
  • Investigating Protein-Peptide Interactions Using the Schrödinger Computational Suite
  • Identifying Loop-Mediated Protein-Protein Interactions using LoopFinder
  • Protein-Peptide Interaction Design: PepCrawler and PinaColada
  • Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions.