Promoter Associated RNA [E-Book] : Methods and Protocols / edited by Sara Napoli.
Napoli, Sara, (editor)
New York, NY : Humana Press, 2017
X, 287 p. 283 illus., 182 illus. in color. online resource.
Methods in molecular biology ; 1543
Full Text
Table of Contents:
  • ChIP-seq for the Identification of Functional Elements in the Human Genome
  • Identification of Candidate Functional Elements in the Genome from ChIP-seq Data
  • GRO-seq, A Tool for Identification of Transcripts Regulating Gene Expression.-NanoCAGE: A Method for the Analysis of Coding and Non-coding 5-capped Transcriptomes
  • Deep Cap Analysis of Gene Expression (CAGE): Genome-Wide Identification of Promoters, Quantification of their Activity Andtranscriptional Network Inference
  • Deep-RACE: Comprehensive Search for Novel ncRNAs Associated to a Specific Locus
  • In silico Prediction of RNA Secondary Structure
  • Computational Prediction of RNA-Protein Interactions
  • Isolation of Nuclear RNA-Associated Protein Complexes
  • Identification of Long Non-Coding RNAs Associated to Human Disease Susceptibility
  • Targeting Promoter-associated RNAs by siRNAs
  • RNA-FISH to Study Regulatory RNA at the Site of Transcription
  • Detection and Characterization of R Loop Structures
  • Induction of Transcriptional Gene Silencing by Expression of shRNA Directed to c-Myc P2 Promoter in Hepatocellular Carcinoma by Tissue Specific Virosomal Delivery
  • Targeting Promoter Associated Non-coding RNA In Vivo
  • Manipulation of Promoter-Associated Noncoding RNAs in Mouse Early Embryos for Controlling Sequence-Specific Epigenetic Status. .