Modeling Biomolecular Site Dynamics [E-Book] : Methods and Protocols / edited by William S. Hlavacek.
This volume covers a variety of topics related to the practice of rule-based modeling, a type of mathematical modeling useful for studying biomolecular site dynamics. There is an emphasis on software tools and detailed descriptions of techniques. The chapters in this book discuss topics such as soft...
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Personal Name(s): | Hlavacek, William S., editor |
Imprint: |
New York, NY :
Humana Press,
2019
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Physical Description: |
XIX, 423 pages 188 illustrations, 108 illustrations in color (online resource) |
Note: |
englisch |
ISBN: |
9781493991020 |
DOI: |
10.1007/978-1-4939-9102-0 |
Series Title: |
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Methods in Molecular Biology ;
1945 |
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- A Pycellerator Tutorial
- Using RuleBuilder to Graphically Define and Visualize BioNetGen-Language Patterns and Reaction Rules
- Strategy-Driven Exploration for Rule-Based Models of Biochemical Systems with PORGY
- Using rxncon to Develop Rule-Based Models
- Efficiently Encoding Complex Biochemical Models with the Multistate Model Builder (MSMB)
- Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules
- Using Python for Spatially Resolved Modeling with Simmune
- Rule-Based Modeling using Wildcards in the Smoldyn Simulator
- MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework
- Spatial Rule-Based Simulations: the SRSim Software
- CellOrganizer: Learning and Using Cell Geometries for Spatial Cell Simulations
- Using Mechanistic Models for Analysis of Proteomic Data
- Annotations for Rule-Based Models
- Markov Chain Aggregation and Its Application to Rule-Based Modelling
- In Silico Evolution of Signaling Networks Using Rule-Based Models: Bistable Response Dynamics
- Recipes for Analysis of Molecular Networks Using the Data2Dynamics Modeling Environment
- RKappa: Software for Analyzing Rule-Based Models
- A Step-by-Step Guide to Using BioNetFit. .