Stem Cell Transcriptional Networks [E-Book] : Methods and Protocols / edited by Benjamin L. Kidder.
Kidder, Benjamin L., (editor)
2nd edition 2020.
New York, NY : Humana Press, 2020
XI, 308 pages 75 illustrations, 67 illustrations in color (online resource)
Methods in Molecular Biology ; 2117
Full Text
Table of Contents:
  • Epitope Tagging ChIP-seq of DNA Binding Proteins using CETCh-seq
  • User-friendly and Interactive Analysis of ChIP-seq data using EaSeq
  • Evaluation of 3D Chromatin Interactions using Hi-C
  • MSTD for Detecting Topological Domains from 3D Genomic Maps
  • Creating 2D Occupancy Plots using plot2DO
  • Detection of Epigenetic Field Defects Using a Weighted Epigenetic Distance-based Method
  • Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx
  • Visualization of Single Cell RNA-Seq Data using t-SNE in R
  • Use of SuperCT for Enhanced Characterization of Single-cell Transcriptomic Profiles
  • Interactive Alternative Splicing Analysis of Human Stem Cells using psichomics
  • Gene Ontology Semantic Similarity Analysis using GOSemSim
  • Derivation of Maternogenic Epiblast Stem Cells from Haploid Embryos
  • Derivation of LIF-independent Embryonic Stem Cells using Inducible OCT4 Expression
  • Simultaneous Derivation of Embryonic and Trophoblast Stem Cells from Mouse Blastocysts
  • Reprogramming Fibroblasts to Neural Stem Cells by Overexpression of the Transcription factor Ptf1a
  • Reprogramming of Fibroblasts to Neural Stem Cells by a Chemical Cocktail
  • Efficient RNA-based Reprogramming of Disease-associated Primary Human Fibroblasts into Induced Pluripotent Stem Cells
  • Direct Reprogramming Of Mouse Embryonic Fibroblasts to Induced Trophoblast Stem (iTS) Cells
  • Characterization of Arsenic-induced Cancer Stem-like Cells. .