Capturing Chromosome Conformation [E-Book] : Methods and Protocols / edited by Beatrice Bodega, Chiara Lanzuolo.
Bodega, Beatrice, (editor)
Lanzuolo, Chiara, (editor)
1st edition 2021.
New York, NY : Humana Press, 2021
XI, 322 pages 66 illustrations, 54 illustrations in color (online resource)
Methods in Molecular Biology ; 2157
Full Text
Table of Contents:
  • Capturing Chromosome Conformation
  • The Chromosome Conformation Capture (3C) in Drosophila melanogaster
  • 4C-Seq: Interrogating Chromatin Looping with Circular Chromosome Conformation Capture
  • Analysis, Modeling, and Visualization of Chromosome Conformation Capture Experiments
  • Targeted DNase Hi-C
  • C-HiC: A High Resolution Method for Unbiased Chromatin Conformation Capture Targeting Small Locus
  • Computational Analysis of Hi-C Data
  • Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP
  • Single-Cell DamID to Capture Contacts between DNA and the Nuclear Lamina in Individual Mammalian Cells
  • Formaldehyde-Mediated Snapshot of Nuclear Architecture
  • Visualization of Chromatin Dynamics by Live Cell Microscopy Using CRISPR/Cas9 Gene Editing and ANCHOR Labeling
  • Preparing Map of Chromosome Territories Distribution Frequency
  • Higher-Order Chromatin Organization Using 3D DNA Fluorescent In Situ Hybridization
  • 3D Immuno-DNA Fluorescence In Situ Hybridization (FISH) for Detection of HIV-1 and Cellular Genes in Primary CD4+ T Cells
  • Visualization of Nuclear and Cytoplasmic Long Noncoding RNAs at Single-Cell Level by RNA-FISH
  • 3D COMBO chrRNA-DNA-Immuno FISH
  • An Algorithm for the Analysis of the 3D Spatial Organization of the Genome.