Hi-C Data Analysis [E-Book] : Methods and Protocols / edited by Silvio Bicciato, Francesco Ferrari.
This volume details a comprehensive set of methods and tools for Hi-C data processing, analysis, and interpretation. Chapters cover applications of Hi-C to address a variety of biological problems, with a specific focus on state-of-the-art computational procedures adopted for the data analysis. Writ...
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Full text |
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Personal Name(s): | Bicciato, Silvio, editor |
Ferrari, Francesco, editor | |
Edition: |
1st edition 2022. |
Imprint: |
New York, NY :
Humana Press,
2022
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Physical Description: |
XIII, 354 pages 62 illustrations, 58 illustrations in color (online resource) |
Note: |
englisch |
ISBN: |
9781071613900 |
DOI: |
10.1007/978-1-0716-1390-0 |
Series Title: |
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Methods in Molecular Biology ;
2301 |
Subject (LOC): |
- Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization
- Methods to Assess the Reproducibility and Similarity of Hi-C Data
- Methods for the Analysis of Topological Associating Domains (TADs)
- Methods for the Differential Analysis of Hi-C D
- Visualising and Annotating Hi-C Data
- Hi-C Data Formats
- Analysis of Hi-C Data for Discovery of Structural Variations In Cancer
- Metagenomes Binning using Proximity-Ligation Data
- Generating High-resolution Hi-C Contact Maps Of Bacteria
- Computational Tools for the Multiscale Analysis of HiC Data in Bacterial Chromosomes
- Analysis of HiChIP Data
- The Physical Behavior of Interphase Chromosomes: Polymer Theory and Coarse-Grain Computer Simulations
- Polymer Folding Simulations from Hi-C Data
- Predictive Polymer Models for 3D Chromosome Organization
- Polymer Modeling of 3D Epigenome Folding: Application to Drosophila
- A Polymer Physics Model To Dissect Genome Organization In Healthy And Pathological Phenotypes
- The 3D Organization of Chromatin Colors in Mammalian Nuclei
- Modeling the 3D Genome using Hi-C and Nuclear Lamin-Genome Contacts.