Table of Contents: “... Genetically Edited Primary Oral Keratinocytes Using the CRISPR-Cas9 System -- Size-Based Method for Enrichment of Circulating Tumor Cells from Blood of Colorectal Cancer Patients -- Strategy for RNA-Seq Experimental Design and Data Analysis -- Characterization...”

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Table of Contents: “...Unveiling the Links between Peptide Identification and Differential Analysis FDR Controls by Means of a Practical Introduction to Knockoff Filters -- A Pipeline for Peptide Detection Using Multiple Decoys -- Enhanced Proteomic Data Analysis...”

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Table of Contents: “... of scATAC-seq with scRNA-seq data -- Using "Galaxy-rCASC", a public Galaxy instance for single-cell RNA-Seq data analysis -- Bringing cell subpopulation discovery on a cloud-HPC using rCASC and StreamFlow -- Profiling RNA editing in single cells....”

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Table of Contents: “...) for Detecting Histone Modifications and Modifiers -- ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis -- Low-Input CUT&RUN for Mouse Oocytes and Preimplantation Embryos -- Imaging Chromatin Accessibility by Assay of Transposase...”

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Table of Contents: “... -- Investigating Physiopathological Roles for Sirtuins in a Mouse Model -- Patient-Derived Organoids for In Vivo Validation of In Vitro Data -- Analysis of HDACi-Coupled Nanoparticles: Opportunities and Challenges -- Development of Pyrazine-Anilinobenzamides as Histone...”

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Table of Contents: “...DNA methylation data analysis using Msuite -- Interactive DNA methylation arrays analysis with ShinyÉPICo -- Predicting Chromatin Interactions from DNA Sequence using DeepC -- Integrating single-cell methylome and transcriptome data with MAPLE...”

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Table of Contents: “... sequencing for rapid identification of bacteria from clinical specimens -- Nanopore sequencing data analysis of 16S rRNA genes using Genome Sync-GSTK system -- Genomic epidemiological analysis of antimicrobial-resistant bacteria with nanopore sequencing -- Rapid...”

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Table of Contents: “... Spectrometry Images using Advanced Data Analysis....”

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Table of Contents: “... -- Multi-Color Flow Cytometry and High-Dimensional Data Analysis to Probe Complex Questions in Vaccinology....”

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Table of Contents: “... Maxillary Primordial Tissue -- Methods of Palate Culture in Later Palatogenesis: Elevation, Horizontal Outgrowth, and Fusion -- Single cell RNA-seq: Cell Isolation and Data Analysis -- Generating Zebrafish RNA-less Mutant Alleles by Deleting Gene Promoters...”

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Table of Contents: “... by pulsed field gel electrophoresis and the germ tube burst method -- RNA-seq data analysis for differential expression -- Quantification and isolation of spontaneous colony growth variants -- Generation of a T-DNA insertion mutant library of Fusarium oxysporum...”

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Table of Contents: “...: Introduction to stem cell biology -- Chapter 26: Transcriptomics -- Chapter 27: Development of Biomarker -- Chapter 28: Single cell genomics -- Chapter 29: Big data Analysis....”

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Table of Contents: “... benthamiana -- A Protocol for Phylogenetic Reconstruction -- RNA-Seq Data Analysis Pipeline for Plants: Transcriptome Assembly, Alignment, and Differential Expression Analysis -- A Protocol for Horizontally Acquired Metabolic Gene Detection in Algae -- Global...”

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Table of Contents: “... to Eukaryotic Translation Initiation Factor 2 -- Mammalian In Vitro Translation Systems -- Measuring Repeat-Associated Non-AUG (RAN) Translation -- Analysis of Ribosome Profiling Data -- Analysis of Translational Control in the Integrated Stress Response by Polysome...”

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