Table of Contents: “... for Bioinformatic Data Analysis -- RNA Interference (RNAi) in Tomato Crop Reseserch -- Protoplast Based Method for Genome Editing in Tetraploid Potato -- The Double Layer Method to the Genesis of Androgenic Plants in Anemone coronaria -- Ploidy Modification for Plant...”

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Table of Contents: “...RNA Post-Transcriptional Modification Mapping Data Analysis Using RNA Framework -- An Informatics Pipeline for Profiling and Annotating RNA Modifications -- EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing...”

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Table of Contents: “... and Downstream Analysis -- Methods of Gene Expression Profiling to Understand Abiotic Stress Perception and Response in Legume Crops -- Method for Bisulphite Sequencing Data Analysis for Whole Genome Level DNA Methylation Detection in Legumes -- Method for Genome-Wide...”

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Table of Contents: “...-Type-Specific Chromatin Organization: In Situ Hi-C Library Preparation for Low-Input Plant Materials -- Chromatin Analysis of Metabolic Gene Clusters in Plants -- Characterization of Plant 3D Chromatin Architecture, In Situ Hi-C Library Preparation and Data...”

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Table of Contents: “... of the Transcriptional Activity and Nuclear Position of a Specific Endogenous Gene -- Visualization of Single mRNAs in Live Neurons -- Lightening Up Gene Activation in Living Drosophila Embryos -- Quantification of mRNA Turnover in Living Cells: A Pipeline for TREAT Data...”

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Table of Contents: “... Databases -- High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE -- Scalable Workflows and Reproducible Data Analysis for Genomics -- Sharing Programming Resources between Bio* Projects....”

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Table of Contents: “... Single-Cell RNA Sequencing and Data Analysis -- Functional Insulator Scanning of CpG Islands to Identify Regulatory Regions of Promoters Using CRISPR -- An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics....”

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Table of Contents: “...Comparison of Gene Expression Profiles in Non-Model Eukaryotic Organisms with RNA-Seq -- Microarray Data Analysis for Transcriptome Profiling -- Pathway and Network Analysis of Differentially Expressed Genes in Transcriptomes -- QuickRNASeq: Guide...”

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Table of Contents: “...Detection and Reconstruction of Circular RNAs from Transcriptomic Data -- Deep Computational Circular RNA Analytics from RNA-seq Data -- Genome-wide circRNA Profiling from RNA-seq Data -- Analysis of Circular RNAs using the Web Tool CircInteractome...”

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Table of Contents: “... Sequencing (ChIP-Seq): Tips and Tricks Regarding the Laboratory Protocol and Initial Downstream Data Analysis -- Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis -- Approaches for the Analysis and Interpretation...”

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Table of Contents: “... (NOMe-seq).-Bisulfite Sequencing of Chromatin Immunoprecipitated DNA (BisChIP-seq).-A Guide to Illumina BeadChip Data Analysis.-Microdroplet PCR for Highly-Multiplexed Targeted Bisulfite Sequencing.-Multiplexed DNA Methylation Analysis of Target Regions Using...”

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Table of Contents: “... Polymorphism Mutation Assay -- Use of Linkage Analysis, Genome-Wide Association Studies, and Next-Generation Sequencing in the Identification of Disease-Causing Mutations -- The GoldenGate Genotyping Assay: Custom Design, Processing, and Data Analysis -- Genome-Wide...”

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