Processing metabolomics and proteomics data with open software : a practical guide [E-Book] / edited by Robert Winkler.
Metabolomics and proteomics allow deep insights into the chemistry and physiology of biological systems. This book expounds open-source programs, platforms and programming tools for analysing metabolomics and proteomics mass spectrometry data. In contrast to commercial software, open-source software...
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Full text |
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Personal Name(s): | Winkler, Robert, editor |
Imprint: |
Cambridge :
Royal Society of Chemistry,
[2020]
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Physical Description: |
1 online resource. |
Note: |
englisch |
ISBN: |
1788019881 9781788017213 9781788019880 1788017218 |
Series Title: |
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New developments in mass spectrometry ;
8 |
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- Introduction
- Mass Spectrometry Data Operations and Workflows
- Metabolomics
- Proteomics
- Statistics, Data Mining and Modeling
- OpenMS and KNIME for Mass Spectrometry Data Processing
- Metabolomics Data Analysis Using MZmine
- Pre-processing and Analysis of Metabolomics Data with XCMS/R and XCMS Online
- Statistical Evaluation and Integration of Multi-omics Data with MetaboAnalyst
- Modular metaX Pipeline for Processing Untargeted Metabolomics Data
- Metabolite Annotation With CEU Mass Mediator
- Metabolite Annotation Using In Silico Generated Compounds: MINE and BioTransformer
- Trans-Proteomic Pipeline for the Identification, Validation, and Quantification of Proteins
- Quantitative Proteomics Data Analysis with PANDA, LFAQ and PANDA-view
- Proteomic Workflows with R/ R Markdown
- Python in Proteomics
- Mass Spectrometry Development Kit (MSDK): a Java Library for Mass Spectrometry Data Processing
- MASSyPup64: Linux Live System for Mass Spectrometry Data Processing
- Cross-platform Software Development and Distribution with Bioconda and BioContainers
- Concluding Remarks and Perspectives