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This page gives access to the digitized version of the Roche Applied Science "Biochemical Pathways" wall chart.
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BioCyc is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms. The BioCyc databases are divided into three tiers, based on their quality: Tier 1: Intensively Curated Databases: EcoCyc: Escherichia coli K12 MetaCyc. Metabolic pathways and enzymes from 300 organisms BioCyc: Open Chemical Database Chemical compound database. Tier 2: 17 Computationally-Derived Databases Subject to Moderate Curation. Tier 3: 142 Computationally-Derived Databases Subject to No Curation
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3
Set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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BOXSHADE is a useful tool for pretty printing and shading of multiple aligments files.
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5
BRENDA (The Comprehensive Enzyme Information System) is an information system representing one of the most comprehensive enzyme repositories. It comprises molecular and biochemical information on enzymes that have been classified by the IUBMB. Every classified enzyme is characterized with respect to its catalyzed biochemical reaction. Kinetic properties of the corresponding reactants are described in detail.
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6
Colibri provides a complete dataset of DNA and protein sequences derived from the paradigm strain E. coli K-12, linked to the relevant annotations and functional assignments. It allows one to easily browse through these data and retrieve information, using various criteria (gene names, location, keywords, etc.).
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7
ExPASy is the new SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools in different areas of life sciences including proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc.
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The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data.
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9
Tools for in silico experiments with complete genomes.
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10
The Interactive Metabolic Pathways Map shows biochemical reactions of the main biological pathways in life in an overview. The "backbone" of the map is the Glycolytic Pathway followed by the TCA (Krebs) Cycle and the Respiratory Chain which together lead to the synthesis of ATP by ATP Synthase. Many biosynthetic and breakdown pathways of metabolism such as carbohydrates, amino acids, lipids are associated with this backbone and are differentiated by the use of color. Metabolites, enzymes, and selected pathways are searchable and interactive. Some 550 reactions are identified by their IUBMB Enzyme Commission (EC) numbers which are then indexed.
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