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Automated morphology analysis for filamentous fungus C1 - Combining small-scale cultivation, lab automation and machine learning

ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud

Seiffarth, Johannes
2024

SoftwareX, 26 (2024) S. 101638 -

“...Biotechnologie; IBG-1 Biotechnologie...”
OpenAccess

2

Talk (non-conference)

Rohr, Katja
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

3

Automated morphology analysis of industrially relevant filamentous fungus Thermothelomyces thermophilus

Rohr, Katja
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

4

Automated Life-Cell Imaging meets AI - From Microbial Sensing to Insight and Control at Scale

Seiffarth, Johannes
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

5

Enabling oxygen-controlled microfluidic cultures for spatiotemporal microbial single-cell analysis

Kasahara, Keitaro
2023

Frontiers in microbiology, 14 (2023) S. 1198170

“...Biotechnologie; IBG-1 Biotechnologie...”
OpenAccess

6

SATOMI and EMSIG: The Power Couple for Analyzing Microbial Live-Cell Experiments

Sitcheu, A. J. Y.
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

7

In vitro evolution of a synthetic organelle inside a picoliter habitat

Witting, Lennart
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

8

Uncertainty-aware Live-Cell Analysis Using a Bayesian Pipeline: Inference of Single-Cell Growth Rates

Paul, Richard Dominik
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

9

Hierarchical Pooling for Robustified Statistical Analysis of Single-Cell Growth Rate Estimation

Stratmann, Anton
2023

“...Biotechnologie; IBG-1 Biotechnologie...”

10

Deep-learning meets microbial live-cell imaging: powerful analysis workflows from annotation to prediction

Wollenhaupt, Bastian
2022

“...Biotechnologie; IBG-1 Biotechnologie...”

11

Communities of Niche-optimized Strains CoNoS — A novel concept for improving biotechnological production of small molecules

Schito, Simone
2022

“...Biotechnologie; IBG-1 Biotechnologie...”

12

Understanding Microbial Communities: The Microfluidic Live-Cell Microscopy Toolbox

Seiffarth, Johannes
2022

“...Biotechnologie; IBG-1 Biotechnologie...”

13

Unraveling microbial co-cultures at the single-cell level inside closed picoliter chambers

Wollenhaupt, Bastian
2022

“...Biotechnologie; IBG-1 Biotechnologie...”

14

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

Scherr, Tim
2022

PLOS ONE, 17 (2022) 11, S. e0277601 -

“...Biotechnologie; IBG-1 Biotechnologie...”
OpenAccess

15

CellSium – versatile cell simulator for microcolony ground truth generation

Sachs, Christian Carsten
2022

Bioinformatics advances, 2 (2022) 1, S. vbac053

“...Biotechnologie; IBG-1 Biotechnologie...”
Get full text OpenAccess

16

Preprint

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

Scherr, Tim
2022

“...Biotechnologie; IBG-1 Biotechnologie...”
OpenAccess

17

ObiWan-Microbi & microbeSEG: Deep learning Tools for Microbial Image Analysis

Neumann, O.
2022

“...Biotechnologie; IBG-1 Biotechnologie...”

18

Preprint

ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud

Seiffarth, Johannes
2022

bioRxiv (2022) S. 4

“...Biotechnologie; IBG-1 Biotechnologie...”
Get full text OpenAccess

19

Communities of Niche-optimized Strains (CoNoS) – Design and creation of stable, genome-reduced co-cultures

Schito, Simone
2022

Metabolic engineering, 73 (2022) S. 91 - 103

“...Biotechnologie; IBG-1 Biotechnologie...”
OpenAccess

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