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1

Journal Article

Practical sampling of constraint-based models: Optimized thinning boosts CHRR performance

Jadebeck, Johann F.
2023

PLoS Computational Biology, 19 (2023) 8, S. e1011378 -

“...Jadebeck, Johann Fredrik...”
OpenAccess

2

Nested Sampling for Non-Nested Models: Solving Bayesian Model Averaging for Biological Network Inference

Jadebeck, Johann Fredrik
2023

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3

Hierarchical Pooling for Robustified Statistical Analysis of Single-Cell Growth Rate Estimation

Stratmann, Anton
2023

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4

Conference Presentation

Integrating 13C labeling and thermodynamic data for thermodynamically consistent Bayesian Metabolic Flux Analysis (T13C-MFA)

Jadebeck, Johann Fredrik
2022

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5

FluxML: An Open Standard for Reproducible Modeling in 13C Metabolic Flux Analysis

Jadebeck, Johann Fredrik
2022

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6

Conference Presentation

FluxML: An open standard for reproducible modeling in 13C metabolic flux analysis

Jadebeck, Johann Fredrik
2022

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7

Journal Article

PolyRound: polytope rounding for random sampling in metabolic networks

Theorell, Axel
2022

Bioinformatics, 38 (2022) 2, S. 566–567

“...Jadebeck, Johann Fredrik...”
OpenAccess

8

Shifting the Limits of Bayesian Inference in Metabolic Modeling: The HPC Sampling Library HOPS

Beyss, Martin
2021

“...Jadebeck, Johann Fredrik...”

9

Netflixing Constraint-Based Sampling with a Microservice Architecture: Robust and Effective Tools for Genome-Scale Challenges

Jadebeck, Johann Fredrik
2021

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10

13C-Metabolic flux analysis with Bayesian statistics: Effects of early stopping isotope labeling experiments

Sternfeld, Fanny
2021

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11

Automated and distributed parameter space sampling for inverse problems in systems biology

Jadebeck, Johann Fredrik
2021

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12

Journal Article

HOPS: high-performance library for (non-)uniform sampling of convex-constrained models

Jadebeck, Johann F
2020

Bioinformatics, 37 (2020) 12, S. 1776-1777

“...Jadebeck, Johann Fredrik...”

13

Efficient Markov Chain Monte Carlo Algorithms for High-Dimensional Convex Polytopes with Applications to Metabolic Networks

Jadebeck, Johann Fredrik
2019

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14

Advances in Markov Chain Monte Carlo techniques for systems biology shifting the limits

Theorell, Axel
2018

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