This title appears in the Scientific Report :
2016
Please use the identifier:
http://dx.doi.org/10.1007/978-3-319-50862-7_5 in citations.
Designing Workflows for the Reproducible Analysis of Electrophysiological Data
Designing Workflows for the Reproducible Analysis of Electrophysiological Data
The workflows that cover the experimental recording of neuronal data up to the publication of figures that illustrate neuroscientific analysis results are interwoven and complex. Unfortunately, current implementations of such workflows of electrophysiological research are far from being automatized,...
Saved in:
LEADER | 06279nam a2200889 a 4500 | ||
---|---|---|---|
001 | 826140 | ||
005 | 20240313103120.0 | ||
020 | |a 978-3-319-50861-0 (print) | ||
020 | |a 978-3-319-50862-7 (electronic) | ||
024 | 7 | |a 10.1007/978-3-319-50862-7_5 |2 doi | |
024 | 7 | |a 0302-9743 |2 ISSN | |
024 | 7 | |a 1611-3349 |2 ISSN | |
037 | |a FZJ-2017-00395 | ||
041 | |a English | ||
082 | |a 004 | ||
100 | 1 | |a Amunts, Katrin |0 P:(DE-Juel1)131631 |b 0 |e Editor |u fzj | |
111 | 2 | |a BrainComp 2015 | |
245 | |a Designing Workflows for the Reproducible Analysis of Electrophysiological Data | ||
260 | |a Cham |c 2016 |b Springer International Publishing | ||
295 | 1 | 0 | |a Brain-Inspired Computing / Amunts, Katrin (Editor) ; Cham : Springer International Publishing, 2016, Chapter 5 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-319-50861-0=978-3-319-50862-7 |
300 | |a 58 - 72 | ||
490 | 0 | |a Lecture Notes in Computer Science |v 10087 | |
520 | |a The workflows that cover the experimental recording of neuronal data up to the publication of figures that illustrate neuroscientific analysis results are interwoven and complex. Unfortunately, current implementations of such workflows of electrophysiological research are far from being automatized, and software supporting such a goal is largely in development or missing. In consequence, the level of reproducibility of data analysis is poor compared to other scientific disciplines. Although the problem is well-known and leads to ineffective, unsustainable science, there is no solution in sight in terms of a complete, provenance-tracked workflow. Here, we outline principle challenges that complicate the design of workflows for electrophysiological research. We detail how existing tools can be integrated to form partial workflows which address some of the challenges. On the basis of a concrete workflow implementation we discuss open questions and urgently needed software components. | ||
588 | |a Dataset connected to CrossRef Book Series | ||
700 | 1 | |a Grandinetti, Lucio |0 P:(DE-HGF)0 |b 1 |e Editor | |
700 | 1 | |a Lippert, Thomas |0 P:(DE-Juel1)132179 |b 2 |e Editor |u fzj | |
700 | 1 | |a Petkov, Nicolai |0 P:(DE-HGF)0 |b 3 |e Editor | |
700 | 1 | |a Denker, Michael |0 P:(DE-Juel1)144807 |b 4 |e Corresponding author |u fzj | |
700 | 1 | |a Grün, Sonja |0 P:(DE-Juel1)144168 |b 5 |u fzj | |
773 | |a 10.1007/978-3-319-50862-7_5 | ||
856 | 4 | |u http://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.pdf |y Restricted | |
856 | 4 | |u http://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.gif?subformat=icon |x icon |y Restricted | |
856 | 4 | |u http://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.jpg?subformat=icon-1440 |x icon-1440 |y Restricted | |
856 | 4 | |u http://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.jpg?subformat=icon-180 |x icon-180 |y Restricted | |
856 | 4 | |u http://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.jpg?subformat=icon-640 |x icon-640 |y Restricted | |
856 | 4 | |u http://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.pdf?subformat=pdfa |x pdfa |y Restricted | |
909 | C | O | |o oai:juser.fz-juelich.de:826140 |p openaire |p VDB |p ec_fundedresources |
910 | 1 | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 0 |6 P:(DE-Juel1)131631 | |
910 | 1 | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 2 |6 P:(DE-Juel1)132179 | |
910 | 1 | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 4 |6 P:(DE-Juel1)144807 | |
910 | 1 | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 5 |6 P:(DE-Juel1)144168 | |
913 | 1 | |a DE-HGF |b Key Technologies |l Decoding the Human Brain |1 G:(DE-HGF)POF3-570 |0 G:(DE-HGF)POF3-571 |2 G:(DE-HGF)POF3-500 |v Connectivity and Activity |x 0 |4 G:(DE-HGF)POF |3 G:(DE-HGF)POF3 | |
914 | 1 | |y 2016 | |
915 | |a Nationallizenz |0 StatID:(DE-HGF)0420 |2 StatID | ||
915 | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS | ||
980 | |a contb | ||
980 | |a VDB | ||
980 | |a contrib | ||
980 | |a I:(DE-Juel1)INM-6-20090406 | ||
980 | |a I:(DE-Juel1)IAS-6-20130828 | ||
980 | |a I:(DE-Juel1)INM-1-20090406 | ||
980 | |a I:(DE-Juel1)JSC-20090406 | ||
980 | |a UNRESTRICTED | ||
536 | |a Kausative Mechanismen mesoskopischer Aktivitätsmuster in der auditorischen Kategorien-Diskrimination |0 G:(GEPRIS)238707842 |c 238707842 |x 4 | ||
536 | |a Brain-inspired multiscale computation in neuromorphic hybrid systems |0 G:(EU-Grant)269921 |c 269921 |x 3 |f FP7-ICT-2009-6 | ||
536 | |a The Human Brain Project |0 G:(EU-Grant)604102 |c 604102 |x 2 |f FP7-ICT-2013-FET-F | ||
536 | |a Supercomputing and Modelling for the Human Brain |0 G:(DE-Juel1)HGF-SMHB-2013-2017 |c HGF-SMHB-2013-2017 |x 1 |f SMHB | ||
536 | |a Connectivity and Activity |0 G:(DE-HGF)POF3-571 |c POF3-571 |x 0 |f POF III | ||
536 | |a Optogenetische Analyse der für kognitive Fähigkeiten zuständigen präfrontal-hippokampalen Netzwerke in der Entwicklung |0 G:(GEPRIS)237833830 |c 237833830 |x 5 | ||
336 | |a bookPart |2 DRIVER | ||
336 | |a PSP 2.7.7 Vacuum |0 7 |2 EndNote | ||
336 | |a BOOK_CHAPTER |2 ORCID | ||
336 | |a Contribution to a conference proceedings |0 PUB:(DE-HGF)8 |2 PUB:(DE-HGF) |m contrib | ||
336 | |a Contribution to a book |b contb |m contb |0 PUB:(DE-HGF)7 |s 1484407042_17616 |2 PUB:(DE-HGF) | ||
336 | |a Output Types/Book chapter |2 DataCite | ||
336 | |a INBOOK |2 BibTeX | ||
981 | |a I:(DE-Juel1)IAS-6-20130828 | ||
920 | |k Computational and Systems Neuroscience; INM-6 |0 I:(DE-Juel1)INM-6-20090406 |l Computational and Systems Neuroscience |x 0 | ||
920 | |k Jülich Supercomputing Center; JSC |0 I:(DE-Juel1)JSC-20090406 |l Jülich Supercomputing Center |x 3 | ||
920 | |k Strukturelle und funktionelle Organisation des Gehirns; INM-1 |0 I:(DE-Juel1)INM-1-20090406 |l Strukturelle und funktionelle Organisation des Gehirns |x 2 | ||
920 | |k Computational and Systems Neuroscience; IAS-6 |0 I:(DE-Juel1)IAS-6-20130828 |l Theoretical Neuroscience |x 1 | ||
990 | |a Amunts, Katrin |0 P:(DE-Juel1)131631 |b 0 |e Editor |u fzj | ||
991 | |a Grün, Sonja |0 P:(DE-Juel1)144168 |b 5 |u fzj | ||
991 | |a Denker, Michael |0 P:(DE-Juel1)144807 |b 4 |e Corresponding author |u fzj | ||
991 | |a Petkov, Nicolai |0 P:(DE-HGF)0 |b 3 |e Editor | ||
991 | |a Lippert, Thomas |0 P:(DE-Juel1)132179 |b 2 |e Editor |u fzj | ||
991 | |a Grandinetti, Lucio |0 P:(DE-HGF)0 |b 1 |e Editor |