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Homologous Recombination [E-Book] : Methods and Protocols  /
Table of Contents: ... Electrophoresis and Southern Blotting -- Analysis of DNA Double-Strand Break Ends Resection and Single-Strand Annealing in S. pombe -- Quantifying DNA End Resection in Human Cells -- Genetic and Molecular approaches to Study Chromosomal Breakage at Secondary Structure...

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Epigenetic Reprogramming During Mouse Embryogenesis [E-Book] : Methods and Protocols /
Table of Contents: ... -- Investigating the Inner Cell Mass of the Mouse Blastocyst by Combined Immunofluorescence Staining and RNA Fluorescent In Situ Hybridization -- Mapping of Chromosome Territories by 3D-Chromosome Painting during Early Mouse Development -- Deciphering the Early Mouse...

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Imaging Gene Expression [E-Book] : Methods and Protocols /
Table of Contents: ... -- Detection of mRNAs Anchored to the Nuclear Envelope during Export Inhibition in Living Cells -- Programmable Chromosome Painting with Oligopaints -- Imaging Chromosome Territory and Gene Loci Positions in Cells Grown on Soft Matrices -- Targeted Manipulation...

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CpG Islands [E-Book] : Methods and Protocols /
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Population Epigenetics [E-Book] : Methods and Protocols /
Table of Contents: ... to Identifying Genome Functionality Through Database Analysis -- Detecting Spatial Chromatin Organization by Chromosome Conformation Capture II: Genome-Wide Profiling by Hi-C -- Quantitative Analysis of Intra-chromosomal Contacts: The 3C-qPCR Method -- 5...

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Plant Genomics [E-Book] : Methods and Protocols /
Table of Contents: ... Lines for QTL Mapping -- Assessing Distribution and Variation of Genome-wide DNA Methylation using Short Read Sequencing -- Circular Chromosome Conformation Capture in Plants -- Genome Wide Profiling of Histone Modifications and Histone Variants...

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The Bacterial Nucleoid [E-Book] : Methods and Protocols /
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Meiosis [E-Book] /
Table of Contents: ... Recombination in Neurospora -- High Throughput Screening to Identify Regulators of Meiosis-Specific Gene Expression in Saccharomyces cerevisiae -- Analysis of Meiotic Chromosome-Associated Protein Dynamics Using Conditional Expression in Budding Yeast -- In Vivo...

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Enhancer RNAs [E-Book] : Methods and Protocols /
Table of Contents: ...) Protocol in Neurons -- Mapping Long non-coding RNA Chromatin Occupancy using Capture Hybridization Analysis of RNA Targets (CHART) -- Detecting long-range Enhancer-promoter Interactions by Quantitative Chromosome Conformation Capture -- Deciphering Noncoding RNA...

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Eukaryotic Transcriptional and Post-Transcriptional Gene Expression Regulation [E-Book] /
Table of Contents: ... Topology using Chromosome Conformation Capture Coupled to High-throughput Sequencing (3C-Seq) -- Using an Inducible CRISPR-Cas9-KRAB Effector System to Dissect Transcriptional Regulation in Human Embryonic Stem Cells -- In vitro assay to Study Histone...

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HDAC/HAT Function Assessment and Inhibitor Development [E-Book] : Methods and Protocols /
Table of Contents: ...Detection of Autophagy Induction After HDAC Inhibitor Treatment in Leukemic Cells -- Assessment of HDACi-Induced Protein Cleavage by Caspases -- Assessment of HDACi-Induced Cytotoxicity -- Analysis of HDACi-Induced Changes in Chromosomal Passenger...

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Cohesin and Condensin [E-Book] : Methods and Protocols /
Table of Contents: ...A Sister Chromatid Cohesion Assay Using Xenopus Egg Extracts -- An In Vitro Assay for Monitoring Topological DNA Entrapment by the Chromosomal Cohesin Complex -- Biochemical and Functional Assays of Human Cohesin-Releasing Factor Wapl -- Detection...

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Arabidopsis Protocols [E-Book] /
Table of Contents: ... Artificial Chromosomes -- Global DNA Methylation Analysis Using Methyl-Sensitive Amplification Polymorphism (MSAP) -- Next Generation Mapping of Genetic Mutations Using Bulk Population Sequencing -- Chemical Fingerprinting of Arabidopsis Using Fourier-transform...

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